icgc_metadata_processing module

icgc_metadata_processing.parse_icgc_json_files(files, donors)[source]

Read json files from file & donor endpoint and extract relevant values

Parameters

  • files – list of paths to json_files, file endpoint

  • donors – list of paths to json_files, donor endpoint

Returns

metadata dictionary

icgc_metadata_processing.write_icgc_table(outpath, metadata)[source]

Write metadata to table

Parameters

  • outpath – to store output table .csv

  • metadata – dictionary

Returns

metadata table