extract_gene_ids2name module

extract_gene_ids2name.create_dict(path)

Save unique gene ids and names to dict

Parameters

path – to gtf file

Returns

gene_dict mapping gene_ids to gene_names

extract_gene_ids2name.lines(genes)

Generator for lines in gtf file

Parameters

genes – .gtf file

extract_gene_ids2name.parse(line)

Parse ;-sep line of gtf file

Parameters

line – of gtf file

Returns

gene_dict

extract_gene_ids2name.write_genes(path, outfile)

Write genes2names into table

Parameters

• path – to genes.gtf

• outfile – path to output file .txt